Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SGW65_RS07795 Genome accession   NZ_CP138661
Coordinates   1615264..1615950 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain DA70870     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610264..1620950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW65_RS07775 rpsT 1611178..1611429 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SGW65_RS07780 holA 1611474..1612448 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  SGW65_RS07785 comEC 1612505..1614706 (-) 2202 WP_338427514.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGW65_RS07790 - 1614711..1615172 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SGW65_RS07795 comEA 1615264..1615950 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  SGW65_RS07800 - 1615990..1616706 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SGW65_RS07805 rsfS 1616709..1617062 (-) 354 WP_001088022.1 ribosome silencing factor -
  SGW65_RS07810 yqeK 1617063..1617647 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SGW65_RS07815 nadD 1617637..1618206 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SGW65_RS07820 yhbY 1618209..1618499 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SGW65_RS07825 aroE 1618503..1619309 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  SGW65_RS07830 yqeH 1619323..1620423 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=904178 SGW65_RS07795 WP_001792568.1 1615264..1615950(-) (comEA) [Staphylococcus aureus strain DA70870]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=904178 SGW65_RS07795 WP_001792568.1 1615264..1615950(-) (comEA) [Staphylococcus aureus strain DA70870]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969