Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW65_RS02760 Genome accession   NZ_CP138661
Coordinates   567575..568144 (+) Length   189 a.a.
NCBI ID   WP_338428438.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70870     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 562575..573144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW65_RS02735 cysE 563788..564435 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SGW65_RS02740 cysS 564419..565819 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  SGW65_RS02745 - 565812..566216 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGW65_RS02750 rlmB 566224..566970 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW65_RS02755 - 566970..567494 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SGW65_RS02760 sigH 567575..568144 (+) 570 WP_338428438.1 RNA polymerase sigma factor Regulator
  SGW65_RS02765 rpmG 568259..568402 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW65_RS02770 secE 568458..568640 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  SGW65_RS02775 nusG 568653..569201 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW65_RS02780 rplK 569382..569804 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW65_RS02785 rplA 570012..570704 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW65_RS02790 rplJ 570976..571476 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW65_RS02795 rplL 571519..571887 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW65_RS02800 - 572062..572670 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23054.94 Da        Isoelectric Point: 9.3964

>NTDB_id=904159 SGW65_RS02760 WP_338428438.1 567575..568144(+) (sigH) [Staphylococcus aureus strain DA70870]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNYYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904159 SGW65_RS02760 WP_338428438.1 567575..568144(+) (sigH) [Staphylococcus aureus strain DA70870]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATTATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979