Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABKA22_RS00445 Genome accession   NZ_CP157287
Coordinates   81397..82182 (-) Length   261 a.a.
NCBI ID   WP_023189497.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 76397..87182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS00415 (ABKA22_00415) - 76946..77419 (+) 474 WP_251906202.1 hypothetical protein -
  ABKA22_RS00420 (ABKA22_00420) - 77809..78111 (-) 303 WP_003132256.1 hypothetical protein -
  ABKA22_RS00425 (ABKA22_00425) - 78113..78280 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  ABKA22_RS00430 (ABKA22_00430) rpmG 78847..78996 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  ABKA22_RS00435 (ABKA22_00435) rpmF 79026..79199 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  ABKA22_RS00440 (ABKA22_00440) - 79563..81344 (+) 1782 WP_251906203.1 heavy metal translocating P-type ATPase -
  ABKA22_RS00445 (ABKA22_00445) spo0J 81397..82182 (-) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  ABKA22_RS00450 (ABKA22_00450) rarA 82237..83496 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  ABKA22_RS00455 (ABKA22_00455) - 83540..84028 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  ABKA22_RS00460 (ABKA22_00460) - 84181..84648 (+) 468 WP_015425634.1 DUF3013 family protein -
  ABKA22_RS00465 (ABKA22_00465) - 84678..86231 (+) 1554 WP_010905113.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABKA22_RS00470 (ABKA22_00470) - 86362..86646 (+) 285 WP_010905114.1 hypothetical protein -
  ABKA22_RS00475 (ABKA22_00475) - 86684..87118 (+) 435 WP_021722897.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29741.60 Da        Isoelectric Point: 9.5731

>NTDB_id=903985 ABKA22_RS00445 WP_023189497.1 81397..82182(-) (spo0J) [Lactococcus lactis strain BIM B-1834]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=903985 ABKA22_RS00445 WP_023189497.1 81397..82182(-) (spo0J) [Lactococcus lactis strain BIM B-1834]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAACCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471