Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABKA22_RS00450 Genome accession   NZ_CP157287
Coordinates   82237..83496 (-) Length   419 a.a.
NCBI ID   WP_010905110.1    Uniprot ID   Q9CJA3
Organism   Lactococcus lactis strain BIM B-1834     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77237..88496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS00420 (ABKA22_00420) - 77809..78111 (-) 303 WP_003132256.1 hypothetical protein -
  ABKA22_RS00425 (ABKA22_00425) - 78113..78280 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  ABKA22_RS00430 (ABKA22_00430) rpmG 78847..78996 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  ABKA22_RS00435 (ABKA22_00435) rpmF 79026..79199 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  ABKA22_RS00440 (ABKA22_00440) - 79563..81344 (+) 1782 WP_251906203.1 heavy metal translocating P-type ATPase -
  ABKA22_RS00445 (ABKA22_00445) spo0J 81397..82182 (-) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  ABKA22_RS00450 (ABKA22_00450) rarA 82237..83496 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  ABKA22_RS00455 (ABKA22_00455) - 83540..84028 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  ABKA22_RS00460 (ABKA22_00460) - 84181..84648 (+) 468 WP_015425634.1 DUF3013 family protein -
  ABKA22_RS00465 (ABKA22_00465) - 84678..86231 (+) 1554 WP_010905113.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABKA22_RS00470 (ABKA22_00470) - 86362..86646 (+) 285 WP_010905114.1 hypothetical protein -
  ABKA22_RS00475 (ABKA22_00475) - 86684..87118 (+) 435 WP_021722897.1 YdeI/OmpD-associated family protein -
  ABKA22_RS00480 (ABKA22_00480) prmA 87190..88143 (+) 954 WP_023189501.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46781.10 Da        Isoelectric Point: 5.7588

>NTDB_id=903986 ABKA22_RS00450 WP_010905110.1 82237..83496(-) (rarA) [Lactococcus lactis strain BIM B-1834]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=903986 ABKA22_RS00450 WP_010905110.1 82237..83496(-) (rarA) [Lactococcus lactis strain BIM B-1834]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599