Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SD459_RS08430 Genome accession   NZ_CP138627
Coordinates   1663410..1664309 (+) Length   299 a.a.
NCBI ID   WP_017417773.1    Uniprot ID   A0A411A614
Organism   Bacillus velezensis strain AYGS-17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1658410..1669309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS08410 (SD459_08405) - 1659101..1660804 (+) 1704 WP_063636634.1 hypothetical protein -
  SD459_RS08415 (SD459_08410) - 1660801..1661082 (+) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -
  SD459_RS08420 (SD459_08415) sucC 1661257..1662414 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  SD459_RS08425 (SD459_08420) sucD 1662443..1663345 (+) 903 WP_014417763.1 succinate--CoA ligase subunit alpha -
  SD459_RS08430 (SD459_08425) dprA 1663410..1664309 (+) 900 WP_017417773.1 DNA-processing protein DprA Machinery gene
  SD459_RS08435 (SD459_08430) topA 1664491..1666566 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  SD459_RS08440 (SD459_08435) trmFO 1666631..1667938 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SD459_RS08445 (SD459_08440) xerC 1668008..1668925 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32834.00 Da        Isoelectric Point: 8.4593

>NTDB_id=903736 SD459_RS08430 WP_017417773.1 1663410..1664309(+) (dprA) [Bacillus velezensis strain AYGS-17]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTALSEGKTVPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKLGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=903736 SD459_RS08430 WP_017417773.1 1663410..1664309(+) (dprA) [Bacillus velezensis strain AYGS-17]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGCTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGGAGAAAACTCGGGATTGTAGGAACGCGGAAACCGACAGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A614

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Legionella pneumophila strain ERS1305867

41.948

89.298

0.375
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368