Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK28_RS05745 Genome accession   NZ_AP027790
Coordinates   1164849..1165364 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2017.06.05CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159849..1170364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK28_RS05700 (VEE55_10930) csrA 1160301..1160486 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK28_RS05730 (VEE55_10940) yqaB 1162079..1162645 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK28_RS05735 (VEE55_10950) yqaA 1162642..1163070 (+) 429 WP_001287457.1 YqaA family protein -
  AABK28_RS05740 (VEE55_10960) gshA 1163143..1164699 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK28_RS05745 (VEE55_10970) luxS 1164849..1165364 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AABK28_RS05750 (VEE55_10980) emrB 1165428..1166966 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK28_RS05755 (VEE55_10990) emrA 1166983..1168155 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK28_RS05760 (VEE55_11000) emrR 1168282..1168812 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK28_RS05765 (VEE55_11010) ygaH 1168903..1169238 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK28_RS05770 (VEE55_11020) ygaZ 1169228..1169965 (-) 738 WP_106490080.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=90373 AABK28_RS05745 WP_001130207.1 1164849..1165364(+) (luxS) [Escherichia coli strain 2017.06.05CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90373 AABK28_RS05745 WP_001130207.1 1164849..1165364(+) (luxS) [Escherichia coli strain 2017.06.05CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment