Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SD459_RS02000 Genome accession   NZ_CP138627
Coordinates   398005..398958 (+) Length   317 a.a.
NCBI ID   WP_014416904.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393005..403958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS01975 (SD459_01975) - 393050..394477 (+) 1428 WP_103527150.1 HAMP domain-containing sensor histidine kinase -
  SD459_RS01980 (SD459_01980) rapC 394636..395784 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  SD459_RS01985 (SD459_01985) phrC 395768..395887 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SD459_RS01990 (SD459_01990) - 396037..396147 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  SD459_RS01995 (SD459_01995) - 396227..397591 (-) 1365 WP_017419273.1 aspartate kinase -
  SD459_RS02000 (SD459_02000) ceuB 398005..398958 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  SD459_RS02005 (SD459_02005) - 398948..399895 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  SD459_RS02010 (SD459_02010) - 399889..400647 (+) 759 WP_063636991.1 ABC transporter ATP-binding protein -
  SD459_RS02015 (SD459_02015) - 400669..401613 (+) 945 WP_063636990.1 siderophore ABC transporter substrate-binding protein -
  SD459_RS02020 (SD459_02020) - 401655..403079 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=903715 SD459_RS02000 WP_014416904.1 398005..398958(+) (ceuB) [Bacillus velezensis strain AYGS-17]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=903715 SD459_RS02000 WP_014416904.1 398005..398958(+) (ceuB) [Bacillus velezensis strain AYGS-17]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCAACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTTTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTCTTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539