Detailed information NTG0903713

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SD459_RS01980
• Genome accession: NZ_CP138627
• Coordinates: 394636..395784 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain AYGS-17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 389636..400784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD459_RS01960 (SD459_01960)	-	390036..390719 (-)	684	WP_063636994.1	ABC transporter ATP-binding protein	-
SD459_RS01965 (SD459_01965)	-	390734..392167 (-)	1434	WP_063636993.1	ABC transporter permease	-
SD459_RS01970 (SD459_01970)	-	392380..393063 (+)	684	WP_014416901.1	response regulator transcription factor	-
SD459_RS01975 (SD459_01975)	-	393050..394477 (+)	1428	WP_103527150.1	HAMP domain-containing sensor histidine kinase	-
SD459_RS01980 (SD459_01980)	rapC	394636..395784 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
SD459_RS01985 (SD459_01985)	phrC	395768..395887 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
SD459_RS01990 (SD459_01990)	-	396037..396147 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
SD459_RS01995 (SD459_01995)	-	396227..397591 (-)	1365	WP_017419273.1	aspartate kinase	-
SD459_RS02000 (SD459_02000)	ceuB	398005..398958 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
SD459_RS02005 (SD459_02005)	-	398948..399895 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
SD459_RS02010 (SD459_02010)	-	399889..400647 (+)	759	WP_063636991.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=903713 SD459_RS01980 WP_003156336.1 394636..395784(+) (rapC) [Bacillus velezensis strain AYGS-17]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=903713 SD459_RS01980 WP_003156336.1 394636..395784(+) (rapC) [Bacillus velezensis strain AYGS-17]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568