Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SGN29_RS07515 Genome accession   NZ_CP138576
Coordinates   1581297..1581983 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MFDS1022333     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576297..1586983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN29_RS07495 rpsT 1577211..1577462 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SGN29_RS07500 holA 1577507..1578481 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  SGN29_RS07505 comEC 1578538..1580739 (-) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGN29_RS07510 - 1580744..1581205 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SGN29_RS07515 comEA 1581297..1581983 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  SGN29_RS07520 - 1582023..1582739 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SGN29_RS07525 rsfS 1582742..1583095 (-) 354 WP_001088020.1 ribosome silencing factor -
  SGN29_RS07530 yqeK 1583096..1583680 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SGN29_RS07535 nadD 1583670..1584239 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SGN29_RS07540 yhbY 1584242..1584532 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SGN29_RS07545 aroE 1584536..1585342 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  SGN29_RS07550 yqeH 1585356..1586456 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=903597 SGN29_RS07515 WP_001788928.1 1581297..1581983(-) (comEA) [Staphylococcus aureus strain MFDS1022333]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=903597 SGN29_RS07515 WP_001788928.1 1581297..1581983(-) (comEA) [Staphylococcus aureus strain MFDS1022333]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969