Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SGN29_RS04415 Genome accession   NZ_CP138576
Coordinates   924299..925285 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MFDS1022333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919299..930285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN29_RS04390 opp4B 919510..920472 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  SGN29_RS04395 opp4C 920486..921367 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  SGN29_RS04400 trpS 921409..922398 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  SGN29_RS04405 spxA 922693..923088 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SGN29_RS04410 mecA 923459..924178 (+) 720 WP_001217728.1 adaptor protein MecA -
  SGN29_RS04415 coiA 924299..925285 (+) 987 WP_000959284.1 competence protein CoiA Machinery gene
  SGN29_RS04420 pepF 925333..927141 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SGN29_RS04425 yjbH 927602..928408 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SGN29_RS04430 - 928431..928796 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  SGN29_RS04435 - 928900..929493 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SGN29_RS04440 - 929679..930026 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=903582 SGN29_RS04415 WP_000959284.1 924299..925285(+) (coiA) [Staphylococcus aureus strain MFDS1022333]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=903582 SGN29_RS04415 WP_000959284.1 924299..925285(+) (coiA) [Staphylococcus aureus strain MFDS1022333]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982