Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGN29_RS02510 Genome accession   NZ_CP138576
Coordinates   533512..534081 (+) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MFDS1022333     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528512..539081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN29_RS02485 cysE 529725..530372 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SGN29_RS02490 cysS 530356..531756 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  SGN29_RS02495 - 531749..532153 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGN29_RS02500 rlmB 532161..532907 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGN29_RS02505 - 532907..533431 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SGN29_RS02510 sigH 533512..534081 (+) 570 WP_045176736.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGN29_RS02515 rpmG 534196..534339 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGN29_RS02520 secE 534395..534577 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGN29_RS02525 nusG 534590..535138 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGN29_RS02530 rplK 535319..535741 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGN29_RS02535 rplA 535949..536641 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGN29_RS02540 rplJ 536913..537413 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGN29_RS02545 rplL 537456..537824 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGN29_RS02550 - 537999..538607 (+) 609 WP_023913388.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=903577 SGN29_RS02510 WP_045176736.1 533512..534081(+) (sigH) [Staphylococcus aureus strain MFDS1022333]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=903577 SGN29_RS02510 WP_045176736.1 533512..534081(+) (sigH) [Staphylococcus aureus strain MFDS1022333]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979