Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SAKRST72_RS07385 Genome accession   NZ_CP138568
Coordinates   1555025..1555471 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAWL001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550025..1560471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAKRST72_RS07355 (SAKRST72_07355) gcvPA 1550951..1552297 (-) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAKRST72_RS07360 (SAKRST72_07360) gcvT 1552317..1553408 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAKRST72_RS07365 (SAKRST72_07365) - 1553567..1554091 (-) 525 WP_001015121.1 shikimate kinase -
  SAKRST72_RS07370 (SAKRST72_07370) - 1554081..1554227 (-) 147 WP_001789879.1 hypothetical protein -
  SAKRST72_RS07375 (SAKRST72_07375) comGF 1554324..1554821 (-) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAKRST72_RS07380 (SAKRST72_07380) comGE 1554739..1555038 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  SAKRST72_RS07385 (SAKRST72_07385) comGD 1555025..1555471 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAKRST72_RS07390 (SAKRST72_07390) comGC 1555449..1555760 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAKRST72_RS07395 (SAKRST72_07395) comGB 1555774..1556844 (-) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAKRST72_RS07400 (SAKRST72_07400) comGA 1556816..1557790 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAKRST72_RS07405 (SAKRST72_07405) - 1557842..1558465 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAKRST72_RS07410 (SAKRST72_07410) - 1558462..1558791 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAKRST72_RS07415 (SAKRST72_07415) - 1558791..1559777 (-) 987 WP_000161314.1 ROK family glucokinase -
  SAKRST72_RS07420 (SAKRST72_07420) - 1559774..1559977 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=903526 SAKRST72_RS07385 WP_001788899.1 1555025..1555471(-) (comGD) [Staphylococcus aureus strain SAWL001]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=903526 SAKRST72_RS07385 WP_001788899.1 1555025..1555471(-) (comGD) [Staphylococcus aureus strain SAWL001]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1