Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHN03_RS10840 Genome accession   NZ_CP138566
Coordinates   2186596..2186991 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2181596..2191991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS10815 thiE 2182194..2182835 (-) 642 WP_223671414.1 thiamine phosphate synthase -
  SHN03_RS10820 thiM 2182837..2183628 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  SHN03_RS10825 thiD 2183612..2184442 (-) 831 WP_000594949.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SHN03_RS10830 tenA 2184435..2185124 (-) 690 WP_000396067.1 thiaminase II -
  SHN03_RS10835 sceD 2185512..2186207 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  SHN03_RS10840 ssb 2186596..2186991 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SHN03_RS10845 - 2187185..2187625 (+) 441 WP_000846751.1 YwpF-like family protein -
  SHN03_RS10850 fabZ 2187681..2188121 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SHN03_RS10855 murA 2188155..2189420 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SHN03_RS10860 - 2189531..2189764 (-) 234 WP_000384523.1 DUF1146 family protein -
  SHN03_RS10865 - 2189896..2189989 (-) 94 Protein_2101 hypothetical protein -
  SHN03_RS10870 - 2190362..2190766 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=903500 SHN03_RS10840 WP_000932694.1 2186596..2186991(-) (ssb) [Staphylococcus aureus strain AUSMDU00020487]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=903500 SHN03_RS10840 WP_000932694.1 2186596..2186991(-) (ssb) [Staphylococcus aureus strain AUSMDU00020487]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATACTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992