Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SHN03_RS07970 Genome accession   NZ_CP138566
Coordinates   1669671..1670357 (-) Length   228 a.a.
NCBI ID   WP_072468915.1    Uniprot ID   A0A5F0HFN7
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664671..1675357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS07950 rpsT 1665585..1665836 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SHN03_RS07955 holA 1665881..1666855 (-) 975 WP_001282573.1 DNA polymerase III subunit delta -
  SHN03_RS07960 comEC 1666912..1669113 (-) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SHN03_RS07965 - 1669118..1669579 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SHN03_RS07970 comEA 1669671..1670357 (-) 687 WP_072468915.1 ComEA family DNA-binding protein Machinery gene
  SHN03_RS07975 - 1670397..1671113 (-) 717 WP_000084840.1 class I SAM-dependent DNA methyltransferase -
  SHN03_RS07980 rsfS 1671116..1671469 (-) 354 WP_001088020.1 ribosome silencing factor -
  SHN03_RS07985 yqeK 1671470..1672054 (-) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SHN03_RS07990 nadD 1672044..1672613 (-) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SHN03_RS07995 yhbY 1672616..1672906 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SHN03_RS08000 aroE 1672910..1673716 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  SHN03_RS08005 yqeH 1673730..1674830 (-) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.41 Da        Isoelectric Point: 9.3305

>NTDB_id=903488 SHN03_RS07970 WP_072468915.1 1669671..1670357(-) (comEA) [Staphylococcus aureus strain AUSMDU00020487]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=903488 SHN03_RS07970 WP_072468915.1 1669671..1670357(-) (comEA) [Staphylococcus aureus strain AUSMDU00020487]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HFN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961