Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SHN03_RS07745 Genome accession   NZ_CP138566
Coordinates   1624737..1625711 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619737..1630711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS07705 gcvT 1620238..1621329 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  SHN03_RS07710 - 1621488..1622012 (-) 525 WP_001015120.1 shikimate kinase -
  SHN03_RS07715 - 1622002..1622148 (-) 147 WP_001789879.1 hypothetical protein -
  SHN03_RS07720 comGF 1622245..1622742 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  SHN03_RS07725 comGE 1622660..1622959 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SHN03_RS07730 comGD 1622946..1623392 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SHN03_RS07735 comGC 1623370..1623681 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  SHN03_RS07740 comGB 1623695..1624765 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  SHN03_RS07745 comGA 1624737..1625711 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SHN03_RS07750 - 1625763..1626386 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  SHN03_RS07755 - 1626383..1626712 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SHN03_RS07760 - 1626712..1627698 (-) 987 WP_000161307.1 ROK family glucokinase -
  SHN03_RS07765 - 1627695..1627898 (-) 204 WP_000087561.1 YqgQ family protein -
  SHN03_RS07770 - 1627879..1629342 (-) 1464 WP_001017870.1 rhomboid family protein -
  SHN03_RS07775 - 1629354..1629893 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  SHN03_RS07780 rpmG 1630102..1630251 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=903485 SHN03_RS07745 WP_000697220.1 1624737..1625711(-) (comGA) [Staphylococcus aureus strain AUSMDU00020487]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=903485 SHN03_RS07745 WP_000697220.1 1624737..1625711(-) (comGA) [Staphylococcus aureus strain AUSMDU00020487]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGACTTGATGTATCTACACAACAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTGATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1