Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SHN03_RS04785 Genome accession   NZ_CP138566
Coordinates   992724..993710 (+) Length   328 a.a.
NCBI ID   WP_000959272.1    Uniprot ID   A0A0U1MHK6
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 987724..998710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS04765 - 987901..989547 (-) 1647 WP_000277741.1 IS1182-like element ISSau3 family transposase -
  SHN03_RS04770 trpS 989833..990822 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SHN03_RS04775 spxA 991117..991512 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SHN03_RS04780 mecA 991884..992603 (+) 720 WP_001217728.1 adaptor protein MecA -
  SHN03_RS04785 coiA 992724..993710 (+) 987 WP_000959272.1 competence protein CoiA Machinery gene
  SHN03_RS04790 pepF 993758..995566 (+) 1809 WP_000082717.1 oligoendopeptidase F -
  SHN03_RS04795 yjbH 996026..996832 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SHN03_RS04800 - 996855..997220 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SHN03_RS04805 - 997324..997917 (-) 594 WP_000224618.1 CYTH domain-containing protein -
  SHN03_RS04810 - 998103..998450 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38875.53 Da        Isoelectric Point: 9.7548

>NTDB_id=903473 SHN03_RS04785 WP_000959272.1 992724..993710(+) (coiA) [Staphylococcus aureus strain AUSMDU00020487]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCYNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=903473 SHN03_RS04785 WP_000959272.1 992724..993710(+) (coiA) [Staphylococcus aureus strain AUSMDU00020487]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTTATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1MHK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

95.732

100

0.957
  coiA Staphylococcus aureus MW2

95.427

100

0.954