Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SHN03_RS02760 Genome accession   NZ_CP138566
Coordinates   580183..580752 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 575183..585752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS02735 cysE 576396..577043 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SHN03_RS02740 cysS 577027..578427 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  SHN03_RS02745 - 578420..578824 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  SHN03_RS02750 rlmB 578832..579578 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SHN03_RS02755 - 579578..580102 (+) 525 WP_000664731.1 NYN domain-containing protein -
  SHN03_RS02760 sigH 580183..580752 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  SHN03_RS02765 rpmG 580867..581010 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SHN03_RS02770 secE 581066..581248 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SHN03_RS02775 nusG 581261..581809 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SHN03_RS02780 rplK 581990..582412 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SHN03_RS02785 rplA 582620..583312 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SHN03_RS02790 rplJ 583584..584084 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SHN03_RS02795 rplL 584127..584495 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SHN03_RS02800 - 584670..585278 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=903468 SHN03_RS02760 WP_000872878.1 580183..580752(+) (sigH) [Staphylococcus aureus strain AUSMDU00020487]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=903468 SHN03_RS02760 WP_000872878.1 580183..580752(+) (sigH) [Staphylococcus aureus strain AUSMDU00020487]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979