Detailed information NTG0090341

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ56_RS22395
• Genome accession: NZ_AP027788
• Coordinates: 4604020..4605045 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.04.02CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4599020..4610045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ56_RS22385 (VEE54_42970)	rpmE	4601251..4601463 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ56_RS22390 (VEE54_42980)	priA	4601666..4603864 (+)	2199	WP_001348093.1	primosomal protein N'	Machinery gene
AABJ56_RS22395 (VEE54_42990)	cytR	4604020..4605045 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ56_RS22400 (VEE54_43000)	ftsN	4605137..4606096 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABJ56_RS22405 (VEE54_43010)	hslV	4606189..4606719 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ56_RS22410 (VEE54_43020)	hslU	4606729..4608060 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABJ56_RS22415 (VEE54_43030)	menA	4608127..4609053 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ56_RS22420 (VEE54_43040)	rraA	4609146..4609631 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ56_RS22425 (VEE54_43050)	zapB	4609716..4609961 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=90341 AABJ56_RS22395 WP_000644904.1 4604020..4605045(+) (cytR) [Escherichia coli strain 2017.04.02CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=90341 AABJ56_RS22395 WP_000644904.1 4604020..4605045(+) (cytR) [Escherichia coli strain 2017.04.02CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628