Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CC22TP_RS07540 Genome accession   NZ_AP025177
Coordinates   1574599..1575045 (-) Length   148 a.a.
NCBI ID   WP_075583651.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TPS6281     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569599..1580045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC22TP_RS07510 (TPS6281TP_14360) gcvPA 1570525..1571871 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CC22TP_RS07515 (TPS6281TP_14370) gcvT 1571891..1572982 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  CC22TP_RS07520 (TPS6281TP_14380) - 1573141..1573665 (-) 525 WP_001015122.1 shikimate kinase -
  CC22TP_RS07525 - 1573655..1573801 (-) 147 WP_001789879.1 hypothetical protein -
  CC22TP_RS07530 (TPS6281TP_14390) comGF 1573898..1574395 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  CC22TP_RS07535 (TPS6281TP_14400) comGE 1574313..1574612 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  CC22TP_RS07540 (TPS6281TP_14410) comGD 1574599..1575045 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  CC22TP_RS07545 (TPS6281TP_14420) comGC 1575023..1575334 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CC22TP_RS07550 (TPS6281TP_14430) comGB 1575348..1576418 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  CC22TP_RS07555 (TPS6281TP_14440) comGA 1576390..1577364 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  CC22TP_RS07560 (TPS6281TP_14450) - 1577416..1578039 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  CC22TP_RS07565 (TPS6281TP_14460) - 1578036..1578365 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CC22TP_RS07570 (TPS6281TP_14470) - 1578365..1579351 (-) 987 WP_000161315.1 ROK family glucokinase -
  CC22TP_RS07575 (TPS6281TP_14480) - 1579348..1579551 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=90320 CC22TP_RS07540 WP_075583651.1 1574599..1575045(-) (comGD) [Staphylococcus aureus strain TPS6281]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=90320 CC22TP_RS07540 WP_075583651.1 1574599..1575045(-) (comGD) [Staphylococcus aureus strain TPS6281]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment