Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SGJ46_RS13465 Genome accession   NZ_CP138461
Coordinates   2791773..2793341 (+) Length   522 a.a.
NCBI ID   WP_303113925.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786773..2798341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS13445 - 2787222..2788526 (+) 1305 WP_177155252.1 homoserine dehydrogenase -
  SGJ46_RS13450 thrC 2788584..2789729 (+) 1146 WP_005181581.1 threonine synthase -
  SGJ46_RS13455 - 2789823..2790905 (-) 1083 WP_127799456.1 serine hydrolase -
  SGJ46_RS13460 - 2791123..2791758 (+) 636 WP_005181577.1 response regulator -
  SGJ46_RS13465 pilS 2791773..2793341 (+) 1569 WP_303113925.1 sensor histidine kinase Regulator
  SGJ46_RS13470 pilR 2793413..2794768 (+) 1356 WP_171525655.1 sigma-54-dependent transcriptional regulator Regulator
  SGJ46_RS13475 - 2794785..2795954 (-) 1170 WP_329415384.1 S41 family peptidase -
  SGJ46_RS13480 gpmI 2795978..2797525 (-) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 60005.68 Da        Isoelectric Point: 7.1647

>NTDB_id=902942 SGJ46_RS13465 WP_303113925.1 2791773..2793341(+) (pilS) [Acinetobacter indicus strain CZH-5]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSDTDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLARFIPQLIQDDLADLAS
QIQVSQPEPLQILFDEPQLRQVLINLIRNAQRHNAPDHPIELQLYRQQNTVYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=902942 SGJ46_RS13465 WP_303113925.1 2791773..2793341(+) (pilS) [Acinetobacter indicus strain CZH-5]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCACTGTATAAAGTACAGCCCGACCTATTTCAATTATTGCAGTTTGACCAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCGCAGCTCAGTCATTTCCTGATCCAGATTCAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGTGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCCTGCTGGCTGGCAGCGATACCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATCGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGCGCGTTTTATTCCGCAGCTGATTCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCTCTGCAGATTCTGTTTGATGAACCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCAGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGAATACGGTCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGC
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGCTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.604

96.743

0.577