Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SGJ46_RS01875 Genome accession   NZ_CP138461
Coordinates   390184..390819 (-) Length   211 a.a.
NCBI ID   WP_329416295.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385184..395819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS01840 mlaE 385461..386240 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SGJ46_RS01845 - 386240..386911 (+) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SGJ46_RS01850 - 386930..387562 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  SGJ46_RS01855 - 387574..387861 (+) 288 WP_177156081.1 STAS domain-containing protein -
  SGJ46_RS01860 - 387998..389011 (-) 1014 WP_104471548.1 CorA family divalent cation transporter -
  SGJ46_RS01865 - 389164..389757 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  SGJ46_RS01870 - 389760..390161 (+) 402 WP_034597959.1 NUDIX hydrolase -
  SGJ46_RS01875 comF 390184..390819 (-) 636 WP_329416295.1 ComF family protein Machinery gene
  SGJ46_RS01880 recG 390806..392851 (-) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  SGJ46_RS01885 - 392885..393700 (+) 816 WP_329416299.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24261.31 Da        Isoelectric Point: 9.2589

>NTDB_id=902915 SGJ46_RS01875 WP_329416295.1 390184..390819(-) (comF) [Acinetobacter indicus strain CZH-5]
MPMSKLLAHSRTLFKKLLPCQLCGSAAQQQYRVCADCLQQLPWLKASVCRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=902915 SGJ46_RS01875 WP_329416295.1 390184..390819(-) (comF) [Acinetobacter indicus strain CZH-5]
ATGCCTATGTCTAAGCTGCTGGCGCATAGCCGTACGCTCTTTAAAAAGTTACTGCCCTGCCAGCTCTGTGGCAGTGCAGC
CCAGCAGCAGTACCGAGTCTGTGCAGACTGTTTGCAACAACTGCCTTGGTTAAAGGCCAGTGTCTGCCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAACAGCAACTGCATTAT
CAGCCTTTACTGGCAGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCTATTGTGCCGATGCCAGTGGCAACCGA
GCGACTGGCAGAGCGAGGTTATCACCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.024

99.052

0.545
  comF Acinetobacter baumannii strain A118

56.281

94.313

0.531