Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ABI424_RS02050 Genome accession   NZ_CP157211
Coordinates   467558..469564 (+) Length   668 a.a.
NCBI ID   WP_012340792.1    Uniprot ID   -
Organism   Histophilus somni strain 23-038383_S91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462558..474564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS02020 (ABI424_000405) tatA 462891..463112 (+) 222 WP_011608702.1 Sec-independent protein translocase subunit TatA -
  ABI424_RS02025 (ABI424_000406) tatB 463116..463670 (+) 555 WP_012340787.1 Sec-independent protein translocase protein TatB -
  ABI424_RS02030 (ABI424_000407) tatC 463667..464404 (+) 738 WP_012340789.1 twin-arginine translocase subunit TatC -
  ABI424_RS02035 (ABI424_000408) hemB 464470..465492 (+) 1023 WP_011608705.1 porphobilinogen synthase -
  ABI424_RS02040 (ABI424_000409) purT 465549..466730 (-) 1182 WP_041605325.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ABI424_RS02045 (ABI424_000410) luxS 466771..467277 (-) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  ABI424_RS02050 (ABI424_000411) recP/tkt 467558..469564 (+) 2007 WP_012340792.1 transketolase Machinery gene
  ABI424_RS02055 (ABI424_000412) - 469757..470479 (-) 723 WP_012340793.1 type ISP restriction/modification enzyme -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73456.19 Da        Isoelectric Point: 5.8980

>NTDB_id=902892 ABI424_RS02050 WP_012340792.1 467558..469564(+) (recP/tkt) [Histophilus somni strain 23-038383_S91]
MVTRRELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKTLAAQFNRAGHDIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVDGHNAEQIIEAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPANIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NIDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEALDAEGVKVRVVSMPSTNVFDKQDVAYREAVLPSAVTKRVAIEAGISDFWYKYVGTNGRIVGMNSF
GESAPADQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=902892 ABI424_RS02050 WP_012340792.1 467558..469564(+) (recP/tkt) [Histophilus somni strain 23-038383_S91]
ATGGTAACTCGTAGGGAATTGGCAAATGCAATCCGTTTTTTAAGTATGGATGCGGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCGGATATTGCGGAAGTATTATGGCGTGATTTTTTAAATCATAATCCGACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTACTGCATCTCACCGGTTAC
GATCTTTCTATCGAAGATTTAAAACAATTTCGTCAATTACATTCCAAGACTCCGGGGCACCCTGAATACGGTTATGCACC
AGGTATTGAAACCACAACGGGTCCATTAGGTCAAGGCATTACTAACGCTGTAGGCATGGCGATTGCAGAAAAAACGTTAG
CCGCACAATTTAATCGAGCAGGTCATGACATTGTTGATCATCATACTTACGTTTTTCTAGGGGATGGTTGCTTAATGGAG
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGCACGTTAGGTCTAGGTAAATTGATTGCTTTTTATGATGATAATAATAT
TTCCATTGACGGTCATGTAGATGGTTGGTTCACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTGATGGACATAATGCAGAACAAATTATTGAAGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACGATTATTGGCTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGGGCACCATTAGGTGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCAGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAATATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATATAGATGGTAACTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATCATGAATGGTATTGCATTGCACGG
CGGATTTATTCCTTATGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAACGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGTCCGACGCATCAACCTGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGTCCTTGCGACCAAGTGGAATCTGCAATCGCATGGAAAGC
AGCGGTTGAACGTCAAGACGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAGC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAAGGTGATTGTCCAGATTTAATCTTGATC
GCCACCGGTTCTGAAGTGGAATTAGCGATGAAAGCAGCGGAAGCGTTAGATGCGGAAGGCGTGAAAGTCCGTGTGGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGTTGCGTACCGTGAGGCAGTATTACCAAGTGCGGTGACTAAACGTG
TTGCAATTGAAGCGGGTATTTCAGATTTCTGGTACAAATATGTTGGTACTAACGGACGTATCGTTGGTATGAATAGCTTT
GGTGAATCAGCACCGGCAGATCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.193

99.401

0.479