Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABI424_RS02045 Genome accession   NZ_CP157211
Coordinates   466771..467277 (-) Length   168 a.a.
NCBI ID   WP_012340791.1    Uniprot ID   B0UVD9
Organism   Histophilus somni strain 23-038383_S91     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 461771..472277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS02020 (ABI424_000405) tatA 462891..463112 (+) 222 WP_011608702.1 Sec-independent protein translocase subunit TatA -
  ABI424_RS02025 (ABI424_000406) tatB 463116..463670 (+) 555 WP_012340787.1 Sec-independent protein translocase protein TatB -
  ABI424_RS02030 (ABI424_000407) tatC 463667..464404 (+) 738 WP_012340789.1 twin-arginine translocase subunit TatC -
  ABI424_RS02035 (ABI424_000408) hemB 464470..465492 (+) 1023 WP_011608705.1 porphobilinogen synthase -
  ABI424_RS02040 (ABI424_000409) purT 465549..466730 (-) 1182 WP_041605325.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ABI424_RS02045 (ABI424_000410) luxS 466771..467277 (-) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  ABI424_RS02050 (ABI424_000411) recP/tkt 467558..469564 (+) 2007 WP_012340792.1 transketolase Machinery gene
  ABI424_RS02055 (ABI424_000412) - 469757..470479 (-) 723 WP_012340793.1 type ISP restriction/modification enzyme -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18981.63 Da        Isoelectric Point: 5.2186

>NTDB_id=902891 ABI424_RS02045 WP_012340791.1 466771..467277(-) (luxS) [Histophilus somni strain 23-038383_S91]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGMPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGVGINKNEDLL
LDDNLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=902891 ABI424_RS02045 WP_012340791.1 466771..467277(-) (luxS) [Histophilus somni strain 23-038383_S91]
ATGCCACTACTTGACAGTTTTAAAGTTGATCATACGAGAATGAATGCCCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCATTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCC
ATGGGCTGTCGAACCGGATTTTATATGTCATTAATTGGCATGCCGAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCGTAGGTATTAATAAAAATGAAGATCTACTT
TTAGATGATAATTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.455

99.405

0.72