Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   SD438_RS07515 Genome accession   NZ_CP138454
Coordinates   1590037..1591278 (-) Length   413 a.a.
NCBI ID   WP_005684320.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain SN21-1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585037..1596278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD438_RS07510 (SD438_07510) - 1588283..1590013 (-) 1731 WP_005684319.1 proline--tRNA ligase -
  SD438_RS07515 (SD438_07515) eeP 1590037..1591278 (-) 1242 WP_005684320.1 RIP metalloprotease RseP Regulator
  SD438_RS07520 (SD438_07520) - 1591295..1592083 (-) 789 WP_005684321.1 phosphatidate cytidylyltransferase -
  SD438_RS07525 (SD438_07525) - 1592119..1592871 (-) 753 WP_005684322.1 isoprenyl transferase -
  SD438_RS07530 (SD438_07530) frr 1593241..1593798 (-) 558 WP_005684323.1 ribosome recycling factor -
  SD438_RS07535 (SD438_07535) pyrH 1593798..1594517 (-) 720 WP_005684324.1 UMP kinase -
  SD438_RS07540 (SD438_07540) tsf 1594885..1595766 (-) 882 WP_005684325.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45253.82 Da        Isoelectric Point: 7.4658

>NTDB_id=902847 SD438_RS07515 WP_005684320.1 1590037..1591278(-) (eeP) [Lacticaseibacillus rhamnosus strain SN21-1]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGTVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQAGKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=902847 SD438_RS07515 WP_005684320.1 1590037..1591278(-) (eeP) [Lacticaseibacillus rhamnosus strain SN21-1]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCGATTGGCATGGGGCCTAAGCTATGGGCCTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAGGATGAGGAAGATGAAATCAAGCCTGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTACAGTGACGCGGATTAATGCCAGTGATAAAACAACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGCTACCCTAATGGCGACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGGTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCCGGGCTTAAGTCAAATGCCACAATTCAGGCGATTGATGGTGAAAAGATTCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGGTAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAGCCTAACAAGGATGGCAAGATCGGTGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTGACTGGCGGCTTTTCGCTTAATAAGTTA
GCTGGGCCGGTCGGAATTTATACCATGACCAGTCAAAGTGCTAAAGGTGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTCGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCGTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTACTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.821

100

0.501
  eeP Streptococcus thermophilus LMD-9

48.585

100

0.499