Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SD438_RS00065 Genome accession   NZ_CP138454
Coordinates   11941..12537 (+) Length   198 a.a.
NCBI ID   WP_005685676.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain SN21-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6941..17537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD438_RS00035 (SD438_00035) - 9424..9522 (+) 99 Protein_6 single-stranded DNA-binding protein -
  SD438_RS00040 (SD438_00040) - 9897..10127 (+) 231 WP_005685681.1 hypothetical protein -
  SD438_RS00045 (SD438_00045) - 10245..10733 (+) 489 WP_005685680.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  SD438_RS00050 (SD438_00050) - 10861..10947 (-) 87 Protein_9 deoxyribose-phosphate aldolase -
  SD438_RS00055 (SD438_00055) ssb 11057..11488 (+) 432 WP_005685678.1 single-stranded DNA-binding protein -
  SD438_RS00060 (SD438_00060) rpsF 11615..11911 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  SD438_RS00065 (SD438_00065) ssb 11941..12537 (+) 597 WP_005685676.1 single-stranded DNA-binding protein Machinery gene
  SD438_RS00070 (SD438_00070) rpsR 12628..12864 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  SD438_RS00075 (SD438_00075) - 13259..13765 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  SD438_RS00080 (SD438_00080) - 14111..15589 (+) 1479 WP_005685669.1 cytochrome ubiquinol oxidase subunit I -
  SD438_RS00085 (SD438_00085) cydB 15582..16601 (+) 1020 WP_005685668.1 cytochrome d ubiquinol oxidase subunit II -
  SD438_RS00090 (SD438_00090) - 16641..16835 (+) 195 WP_005685667.1 hypothetical protein -
  SD438_RS00095 (SD438_00095) - 16914..17339 (-) 426 WP_005685666.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21161.89 Da        Isoelectric Point: 4.9056

>NTDB_id=902834 SD438_RS00065 WP_005685676.1 11941..12537(+) (ssb) [Lacticaseibacillus rhamnosus strain SN21-1]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSTAPSSNPGQ
NQNPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=902834 SD438_RS00065 WP_005685676.1 11941..12537(+) (ssb) [Lacticaseibacillus rhamnosus strain SN21-1]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCCGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTACTGCACCATCATCGAATCCGGGACAA
AATCAAAACCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAA
ACCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.111

100

0.611
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.515