Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LPC25_RS04510 Genome accession   NZ_AP025176
Coordinates   949991..950977 (+) Length   328 a.a.
NCBI ID   WP_000959294.1    Uniprot ID   A0AAE2ZVZ2
Organism   Staphylococcus aureus strain TPS5614     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 944991..955977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC25_RS04485 (TPS5614TP_08520) - 945824..946333 (+) 510 Protein_879 transposase -
  LPC25_RS04490 (TPS5614TP_08530) trpS 946359..947348 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  LPC25_RS04495 (TPS5614TP_08540) spxA 947643..948038 (+) 396 WP_000258001.1 transcriptional regulator SpxA -
  LPC25_RS04500 (TPS5614TP_08550) tnpA 948250..948735 (+) 486 WP_000093392.1 IS200/IS605 family transposase -
  LPC25_RS04505 (TPS5614TP_08560) mecA 949151..949870 (+) 720 WP_001217724.1 adaptor protein MecA -
  LPC25_RS04510 (TPS5614TP_08570) coiA 949991..950977 (+) 987 WP_000959294.1 competence protein CoiA Machinery gene
  LPC25_RS04515 (TPS5614TP_08580) pepF 951025..952833 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  LPC25_RS04520 (TPS5614TP_08590) yjbH 953293..954099 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  LPC25_RS04525 (TPS5614TP_08600) - 954122..954487 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LPC25_RS04530 (TPS5614TP_08610) - 954591..955184 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  LPC25_RS04535 (TPS5614TP_08620) - 955370..955717 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38798.50 Da        Isoelectric Point: 9.5881

>NTDB_id=90270 LPC25_RS04510 WP_000959294.1 949991..950977(+) (coiA) [Staphylococcus aureus strain TPS5614]
MLVALNEEKERVLATTVLRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLLLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=90270 LPC25_RS04510 WP_000959294.1 949991..950977(+) (coiA) [Staphylococcus aureus strain TPS5614]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGTATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATTGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.78

100

0.988
  coiA Staphylococcus aureus MW2

97.561

100

0.976

Multiple sequence alignment