Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SD196_RS01960 Genome accession   NZ_CP138377
Coordinates   420387..420794 (+) Length   135 a.a.
NCBI ID   WP_015475142.1    Uniprot ID   A0AA42HJ21
Organism   Pseudomonas sp. W03     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 415387..425794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD196_RS01930 (SD196_01935) - 415413..416417 (-) 1005 WP_275609800.1 aspartate carbamoyltransferase catalytic subunit -
  SD196_RS01935 (SD196_01940) pyrR 416463..416975 (-) 513 WP_275609801.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SD196_RS01940 (SD196_01945) ruvX 417127..417564 (-) 438 WP_343578266.1 Holliday junction resolvase RuvX -
  SD196_RS01945 (SD196_01950) - 417561..418130 (-) 570 WP_275609802.1 YqgE/AlgH family protein -
  SD196_RS01950 (SD196_01955) - 418207..419100 (-) 894 WP_275609803.1 energy transducer TonB -
  SD196_RS01955 (SD196_01960) gshB 419155..420117 (-) 963 WP_275609804.1 glutathione synthase -
  SD196_RS01960 (SD196_01965) pilG 420387..420794 (+) 408 WP_015475142.1 twitching motility response regulator PilG Regulator
  SD196_RS01965 (SD196_01970) pilH 420841..421206 (+) 366 WP_009615257.1 twitching motility response regulator PilH -
  SD196_RS01970 (SD196_01975) - 421269..421805 (+) 537 WP_275609805.1 chemotaxis protein CheW -
  SD196_RS01975 (SD196_01980) - 421886..423934 (+) 2049 WP_275609806.1 methyl-accepting chemotaxis protein -
  SD196_RS01980 (SD196_01985) - 423994..424857 (+) 864 WP_331315680.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14810.17 Da        Isoelectric Point: 6.8621

>NTDB_id=902524 SD196_RS01960 WP_015475142.1 420387..420794(+) (pilG) [Pseudomonas sp. W03]
MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEHAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=902524 SD196_RS01960 WP_015475142.1 420387..420794(+) (pilG) [Pseudomonas sp. W03]
ATGGAACAGCATTCCGACGGTTTGAAAGTGATGGTGATCGACGACTCCAAGACGATTCGTCGCACCGCCGAAACCCTGCT
GAAGAAAGTCGGCTGCGATGTAATCACAGCCATCGACGGCTTCGACGCCCTGGCCAAGATTGCCGATACCCATCCCAGCA
TCATCTTCGTCGACATCATGATGCCCCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCCTTCAAA
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGACCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAGCTGCTCGGCGCGATCAAGACCCATGTGCCTGACTTTACCCCGGTGGAGCACG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393