Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE117_RS10645 Genome accession   NZ_CP138363
Coordinates   2155648..2156043 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15V8707     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2150648..2161043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE117_RS10620 (SE117_10620) thiE 2151247..2151888 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  SE117_RS10625 (SE117_10625) thiM 2151890..2152681 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  SE117_RS10630 (SE117_10630) thiD 2152665..2153495 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SE117_RS10635 (SE117_10635) tenA 2153488..2154177 (-) 690 WP_319097616.1 thiaminase II -
  SE117_RS10640 (SE117_10640) sceD 2154564..2155259 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  SE117_RS10645 (SE117_10645) ssb 2155648..2156043 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SE117_RS10650 (SE117_10650) - 2156237..2156677 (+) 441 WP_000846746.1 YwpF-like family protein -
  SE117_RS10655 (SE117_10655) fabZ 2156734..2157174 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SE117_RS10660 (SE117_10660) murA 2157208..2158473 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SE117_RS10665 (SE117_10665) - 2158584..2158817 (-) 234 WP_000384523.1 DUF1146 family protein -
  SE117_RS10670 (SE117_10670) - 2159438..2159842 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=902219 SE117_RS10645 WP_000932694.1 2155648..2156043(-) (ssb) [Staphylococcus aureus strain 15V8707]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=902219 SE117_RS10645 WP_000932694.1 2155648..2156043(-) (ssb) [Staphylococcus aureus strain 15V8707]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992