Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SE117_RS07455 Genome accession   NZ_CP138363
Coordinates   1579553..1580239 (-) Length   228 a.a.
NCBI ID   WP_078370367.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15V8707     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574553..1585239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE117_RS07435 (SE117_07435) rpsT 1575467..1575718 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SE117_RS07440 (SE117_07440) holA 1575763..1576737 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SE117_RS07445 (SE117_07445) comEC 1576794..1578995 (-) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SE117_RS07450 (SE117_07450) - 1579000..1579461 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SE117_RS07455 (SE117_07455) comEA 1579553..1580239 (-) 687 WP_078370367.1 ComEA family DNA-binding protein Machinery gene
  SE117_RS07460 (SE117_07460) - 1580279..1580995 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  SE117_RS07465 (SE117_07465) rsfS 1580998..1581351 (-) 354 WP_001088020.1 ribosome silencing factor -
  SE117_RS07470 (SE117_07470) yqeK 1581352..1581936 (-) 585 WP_319097259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SE117_RS07475 (SE117_07475) nadD 1581926..1582495 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SE117_RS07480 (SE117_07480) yhbY 1582498..1582788 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SE117_RS07485 (SE117_07485) aroE 1582792..1583598 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  SE117_RS07490 (SE117_07490) yqeH 1583612..1584712 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25691.46 Da        Isoelectric Point: 9.5413

>NTDB_id=902207 SE117_RS07455 WP_078370367.1 1579553..1580239(-) (comEA) [Staphylococcus aureus strain 15V8707]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=902207 SE117_RS07455 WP_078370367.1 1579553..1580239(-) (comEA) [Staphylococcus aureus strain 15V8707]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969
  comEA Staphylococcus aureus N315

97.357

99.561

0.969