Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SE117_RS04410 Genome accession   NZ_CP138363
Coordinates   933571..934557 (+) Length   328 a.a.
NCBI ID   WP_000959280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15V8707     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928571..939557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE117_RS04385 (SE117_04385) opp4B 928784..929746 (+) 963 WP_000593670.1 oligopeptide ABC transporter permease -
  SE117_RS04390 (SE117_04390) opp4C 929758..930639 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  SE117_RS04395 (SE117_04395) trpS 930681..931670 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SE117_RS04400 (SE117_04400) spxA 931965..932360 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SE117_RS04405 (SE117_04405) mecA 932731..933450 (+) 720 WP_001217736.1 adaptor protein MecA -
  SE117_RS04410 (SE117_04410) coiA 933571..934557 (+) 987 WP_000959280.1 competence protein CoiA Machinery gene
  SE117_RS04415 (SE117_04415) pepF 934605..936413 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SE117_RS04420 (SE117_04420) yjbH 936873..937679 (-) 807 WP_103144341.1 protease adaptor protein YjbH -
  SE117_RS04425 (SE117_04425) - 937702..938067 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SE117_RS04430 (SE117_04430) - 938171..938764 (-) 594 WP_319098532.1 CYTH domain-containing protein -
  SE117_RS04435 (SE117_04435) - 938950..939297 (+) 348 WP_319098534.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38720.32 Da        Isoelectric Point: 9.6486

>NTDB_id=902192 SE117_RS04410 WP_000959280.1 933571..934557(+) (coiA) [Staphylococcus aureus strain 15V8707]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLKISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=902192 SE117_RS04410 WP_000959280.1 933571..934557(+) (coiA) [Staphylococcus aureus strain 15V8707]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAAAATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963