Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SE116_RS07385 Genome accession   NZ_CP138362
Coordinates   1559389..1559835 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554389..1564835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS07355 (SE116_07355) gcvPA 1555316..1556662 (-) 1347 WP_319161731.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SE116_RS07360 (SE116_07360) gcvT 1556682..1557773 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  SE116_RS07365 (SE116_07365) - 1557931..1558455 (-) 525 WP_001015120.1 shikimate kinase -
  SE116_RS07370 (SE116_07370) - 1558445..1558591 (-) 147 WP_001789879.1 hypothetical protein -
  SE116_RS07375 (SE116_07375) comGF 1558688..1559185 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  SE116_RS07380 (SE116_07380) comGE 1559103..1559402 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  SE116_RS07385 (SE116_07385) comGD 1559389..1559835 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SE116_RS07390 (SE116_07390) comGC 1559813..1560124 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SE116_RS07395 (SE116_07395) comGB 1560138..1561208 (-) 1071 WP_319161735.1 competence type IV pilus assembly protein ComGB Machinery gene
  SE116_RS07400 (SE116_07400) comGA 1561180..1562154 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SE116_RS07405 (SE116_07405) - 1562206..1562829 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SE116_RS07410 (SE116_07410) - 1562826..1563155 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SE116_RS07415 (SE116_07415) - 1563155..1564141 (-) 987 WP_000161315.1 ROK family glucokinase -
  SE116_RS07420 (SE116_07420) - 1564138..1564341 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=902159 SE116_RS07385 WP_001796473.1 1559389..1559835(-) (comGD) [Staphylococcus aureus strain V315]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=902159 SE116_RS07385 WP_001796473.1 1559389..1559835(-) (comGD) [Staphylococcus aureus strain V315]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993