Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SE116_RS05870 Genome accession   NZ_CP138362
Coordinates   1221906..1222778 (+) Length   290 a.a.
NCBI ID   WP_319162601.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1216906..1227778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS05840 (SE116_05840) - 1217052..1217819 (+) 768 WP_000176392.1 ribonuclease HII -
  SE116_RS05845 (SE116_05845) sucC 1217928..1219094 (+) 1167 WP_001020804.1 ADP-forming succinate--CoA ligase subunit beta -
  SE116_RS05850 (SE116_05850) sucD 1219116..1220024 (+) 909 WP_319162599.1 succinate--CoA ligase subunit alpha -
  SE116_RS05855 (SE116_05855) - 1220250..1220306 (+) 57 Protein_1144 YSIRK-type signal peptide-containing protein -
  SE116_RS05860 (SE116_05860) - 1220310..1220462 (+) 153 Protein_1145 cell wall hydrolase -
  SE116_RS05865 (SE116_05865) fmhC 1220490..1221734 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  SE116_RS05870 (SE116_05870) dprA 1221906..1222778 (+) 873 WP_319162601.1 DNA-processing protein DprA Machinery gene
  SE116_RS05875 (SE116_05875) topA 1222952..1225027 (+) 2076 WP_014532615.1 type I DNA topoisomerase -
  SE116_RS05880 (SE116_05880) trmFO 1225183..1226490 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33580.95 Da        Isoelectric Point: 9.5142

>NTDB_id=902152 SE116_RS05870 WP_319162601.1 1221906..1222778(+) (dprA) [Staphylococcus aureus strain V315]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGDRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYT
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=902152 SE116_RS05870 WP_319162601.1 1221906..1222778(+) (dprA) [Staphylococcus aureus strain V315]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGACAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACACT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979