Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SE116_RS04580 Genome accession   NZ_CP138362
Coordinates   960075..961061 (+) Length   328 a.a.
NCBI ID   WP_000959280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 955075..966061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS04555 (SE116_04555) opp4B 955288..956250 (+) 963 WP_319162528.1 oligopeptide ABC transporter permease -
  SE116_RS04560 (SE116_04560) opp4C 956262..957143 (+) 882 WP_319162530.1 oligopeptide ABC transporter permease -
  SE116_RS04565 (SE116_04565) trpS 957185..958174 (-) 990 WP_031784599.1 tryptophan--tRNA ligase -
  SE116_RS04570 (SE116_04570) spxA 958469..958864 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SE116_RS04575 (SE116_04575) mecA 959235..959954 (+) 720 WP_001217736.1 adaptor protein MecA -
  SE116_RS04580 (SE116_04580) coiA 960075..961061 (+) 987 WP_000959280.1 competence protein CoiA Machinery gene
  SE116_RS04585 (SE116_04585) pepF 961109..962917 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SE116_RS04590 (SE116_04590) yjbH 963377..964183 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SE116_RS04595 (SE116_04595) - 964206..964571 (-) 366 WP_319162536.1 truncated hemoglobin YjbI -
  SE116_RS04600 (SE116_04600) - 964675..965268 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  SE116_RS04605 (SE116_04605) - 965454..965801 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38720.32 Da        Isoelectric Point: 9.6486

>NTDB_id=902150 SE116_RS04580 WP_000959280.1 960075..961061(+) (coiA) [Staphylococcus aureus strain V315]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLKISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=902150 SE116_RS04580 WP_000959280.1 960075..961061(+) (coiA) [Staphylococcus aureus strain V315]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAAAATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963