Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SE116_RS02575 Genome accession   NZ_CP138362
Coordinates   552456..553025 (+) Length   189 a.a.
NCBI ID   WP_000872875.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 547456..558025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS02550 (SE116_02550) cysE 548669..549316 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SE116_RS02555 (SE116_02555) cysS 549300..550700 (+) 1401 WP_000631972.1 cysteine--tRNA ligase -
  SE116_RS02560 (SE116_02560) - 550693..551097 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SE116_RS02565 (SE116_02565) rlmB 551105..551851 (+) 747 WP_000390334.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SE116_RS02570 (SE116_02570) - 551851..552375 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SE116_RS02575 (SE116_02575) sigH 552456..553025 (+) 570 WP_000872875.1 sigma-70 family RNA polymerase sigma factor Regulator
  SE116_RS02580 (SE116_02580) rpmG 553140..553283 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SE116_RS02585 (SE116_02585) secE 553339..553521 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SE116_RS02590 (SE116_02590) nusG 553534..554082 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SE116_RS02595 (SE116_02595) rplK 554263..554685 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SE116_RS02600 (SE116_02600) rplA 554893..555585 (+) 693 WP_319162454.1 50S ribosomal protein L1 -
  SE116_RS02605 (SE116_02605) rplJ 555857..556357 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SE116_RS02610 (SE116_02610) rplL 556400..556768 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SE116_RS02615 (SE116_02615) - 556943..557551 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=902145 SE116_RS02575 WP_000872875.1 552456..553025(+) (sigH) [Staphylococcus aureus strain V315]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKII

Nucleotide


Download         Length: 570 bp        

>NTDB_id=902145 SE116_RS02575 WP_000872875.1 552456..553025(+) (sigH) [Staphylococcus aureus strain V315]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGGAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATAATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979