Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LPC26_RS11390 | Genome accession | NZ_AP025162 |
| Coordinates | 2307648..2308166 (+) | Length | 172 a.a. |
| NCBI ID | WP_013085589.1 | Uniprot ID | A0A109DE21 |
| Organism | Lactobacillus crispatus strain KT-11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2299926..2327481 | 2307648..2308166 | within | 0 |
Gene organization within MGE regions
Location: 2299926..2327481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPC26_RS11360 | dnaN | 2299926..2301056 (+) | 1131 | WP_005721892.1 | DNA polymerase III subunit beta | - |
| LPC26_RS11365 | yaaA | 2301273..2301494 (+) | 222 | WP_005721893.1 | S4 domain-containing protein YaaA | - |
| LPC26_RS11370 | recF | 2301503..2302630 (+) | 1128 | WP_005721038.1 | DNA replication/repair protein RecF | - |
| LPC26_RS11375 | gyrB | 2302631..2304595 (+) | 1965 | WP_229265813.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LPC26_RS11380 | gyrA | 2304605..2307085 (+) | 2481 | WP_060462108.1 | DNA gyrase subunit A | - |
| LPC26_RS11385 | rpsF | 2307302..2307598 (+) | 297 | WP_005723612.1 | 30S ribosomal protein S6 | - |
| LPC26_RS11390 | ssb | 2307648..2308166 (+) | 519 | WP_013085589.1 | single-stranded DNA-binding protein | Machinery gene |
| LPC26_RS11395 | rpsR | 2308194..2308430 (+) | 237 | WP_229265814.1 | 30S ribosomal protein S18 | - |
| LPC26_RS11400 | - | 2308489..2308959 (-) | 471 | WP_013085590.1 | hypothetical protein | - |
| LPC26_RS11405 | - | 2308943..2309296 (-) | 354 | WP_035442818.1 | helix-turn-helix domain-containing protein | - |
| LPC26_RS11410 | - | 2309629..2309946 (+) | 318 | WP_023487822.1 | hypothetical protein | - |
| LPC26_RS11415 | - | 2309985..2310983 (+) | 999 | WP_023487823.1 | helveticin J family class III bacteriocin | - |
| LPC26_RS11420 | - | 2311124..2312239 (+) | 1116 | WP_173636655.1 | SLAP domain-containing protein | - |
| LPC26_RS11425 | - | 2312450..2314471 (+) | 2022 | WP_005721046.1 | DHH family phosphoesterase | - |
| LPC26_RS11430 | rplI | 2314483..2314938 (+) | 456 | WP_005721048.1 | 50S ribosomal protein L9 | - |
| LPC26_RS11435 | dnaB | 2314959..2316350 (+) | 1392 | WP_005721050.1 | replicative DNA helicase | - |
| LPC26_RS11440 | - | 2316517..2317452 (+) | 936 | WP_023487826.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| LPC26_RS11445 | - | 2317562..2318491 (+) | 930 | WP_060462107.1 | DegV family protein | - |
| LPC26_RS11450 | - | 2318589..2320193 (+) | 1605 | WP_060462129.1 | ATP-binding cassette domain-containing protein | - |
| LPC26_RS11455 | - | 2320324..2321202 (+) | 879 | WP_060462106.1 | ROK family protein | - |
| LPC26_RS11460 | - | 2321350..2321541 (+) | 192 | WP_005723606.1 | CsbD family protein | - |
| LPC26_RS11465 | - | 2321592..2321849 (+) | 258 | WP_060462105.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| LPC26_RS11470 | - | 2321823..2323552 (-) | 1730 | Protein_2225 | IS1182 family transposase | - |
| LPC26_RS11475 | nrdF | 2323907..2324914 (+) | 1008 | WP_119724393.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| LPC26_RS11480 | nrdI | 2324895..2325320 (+) | 426 | WP_003649880.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| LPC26_RS11485 | nrdE | 2325313..2327481 (+) | 2169 | WP_229265815.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18649.18 Da Isoelectric Point: 4.7317
>NTDB_id=90214 LPC26_RS11390 WP_013085589.1 2307648..2308166(+) (ssb) [Lactobacillus crispatus strain KT-11]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=90214 LPC26_RS11390 WP_013085589.1 2307648..2308166(+) (ssb) [Lactobacillus crispatus strain KT-11]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.571 |
100 |
0.616 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.273 |
100 |
0.535 |