Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE087_RS10930 Genome accession   NZ_CP138360
Coordinates   2188776..2189171 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2183776..2194171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS10905 (SE087_10905) thiE 2184366..2185007 (-) 642 WP_217176076.1 thiamine phosphate synthase -
  SE087_RS10910 (SE087_10910) thiM 2185009..2185800 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  SE087_RS10915 (SE087_10915) thiD 2185784..2186614 (-) 831 WP_217176077.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SE087_RS10920 (SE087_10920) tenA 2186607..2187296 (-) 690 WP_000396067.1 thiaminase II -
  SE087_RS10925 (SE087_10925) sceD 2187683..2188387 (-) 705 WP_217205130.1 lytic transglycosylase SceD -
  SE087_RS10930 (SE087_10930) ssb 2188776..2189171 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SE087_RS10935 (SE087_10935) - 2189365..2189805 (+) 441 WP_000846746.1 YwpF-like family protein -
  SE087_RS10940 (SE087_10940) fabZ 2189862..2190302 (-) 441 WP_319086474.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SE087_RS10945 (SE087_10945) murA 2190336..2191601 (-) 1266 WP_319086476.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SE087_RS10950 (SE087_10950) - 2191712..2191945 (-) 234 WP_000384523.1 DUF1146 family protein -
  SE087_RS10955 (SE087_10955) - 2192077..2192170 (-) 94 Protein_2119 hypothetical protein -
  SE087_RS10960 (SE087_10960) - 2192710..2193114 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=902135 SE087_RS10930 WP_000932694.1 2188776..2189171(-) (ssb) [Staphylococcus aureus strain 17CS1042]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=902135 SE087_RS10930 WP_000932694.1 2188776..2189171(-) (ssb) [Staphylococcus aureus strain 17CS1042]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992