Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SE087_RS06335 Genome accession   NZ_CP138360
Coordinates   1281844..1282716 (+) Length   290 a.a.
NCBI ID   WP_250737646.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1276844..1287716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS06315 (SE087_06315) sucC 1276959..1278125 (+) 1167 WP_217175670.1 ADP-forming succinate--CoA ligase subunit beta -
  SE087_RS06320 (SE087_06320) sucD 1278147..1279055 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SE087_RS06325 (SE087_06325) - 1279282..1280400 (+) 1119 WP_001041654.1 LysM peptidoglycan-binding domain-containing protein -
  SE087_RS06330 (SE087_06330) fmhC 1280428..1281672 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  SE087_RS06335 (SE087_06335) dprA 1281844..1282716 (+) 873 WP_250737646.1 DNA-processing protein DprA Machinery gene
  SE087_RS06340 (SE087_06340) topA 1282890..1284965 (+) 2076 WP_319096530.1 type I DNA topoisomerase -
  SE087_RS06345 (SE087_06345) trmFO 1285121..1286428 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33524.93 Da        Isoelectric Point: 9.6076

>NTDB_id=902113 SE087_RS06335 WP_250737646.1 1281844..1282716(+) (dprA) [Staphylococcus aureus strain 17CS1042]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTSIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=902113 SE087_RS06335 WP_250737646.1 1281844..1282716(+) (dprA) [Staphylococcus aureus strain 17CS1042]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACATCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGGTCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983