Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SE087_RS02815 Genome accession   NZ_CP138360
Coordinates   579433..580002 (+) Length   189 a.a.
NCBI ID   WP_000872871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 574433..585002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS02790 (SE087_02790) cysE 575646..576293 (+) 648 WP_111073207.1 serine O-acetyltransferase -
  SE087_RS02795 (SE087_02795) cysS 576277..577677 (+) 1401 WP_217176102.1 cysteine--tRNA ligase -
  SE087_RS02800 (SE087_02800) - 577670..578074 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SE087_RS02805 (SE087_02805) rlmB 578082..578828 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SE087_RS02810 (SE087_02810) - 578828..579352 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SE087_RS02815 (SE087_02815) sigH 579433..580002 (+) 570 WP_000872871.1 sigma-70 family RNA polymerase sigma factor Regulator
  SE087_RS02820 (SE087_02820) rpmG 580117..580260 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SE087_RS02825 (SE087_02825) secE 580316..580498 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SE087_RS02830 (SE087_02830) nusG 580511..581059 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SE087_RS02835 (SE087_02835) rplK 581240..581662 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SE087_RS02840 (SE087_02840) rplA 581870..582562 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SE087_RS02845 (SE087_02845) rplJ 582834..583334 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SE087_RS02850 (SE087_02850) rplL 583378..583746 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SE087_RS02855 (SE087_02855) - 583921..584529 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=902106 SE087_RS02815 WP_000872871.1 579433..580002(+) (sigH) [Staphylococcus aureus strain 17CS1042]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKNLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=902106 SE087_RS02815 WP_000872871.1 579433..580002(+) (sigH) [Staphylococcus aureus strain 17CS1042]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGAAAAAATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAAAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979