Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RQP18_RS06645 Genome accession   NZ_CP138333
Coordinates   1329673..1330002 (+) Length   109 a.a.
NCBI ID   WP_342386965.1    Uniprot ID   -
Organism   Salinicoccus sp. Bachu38     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324673..1335002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP18_RS06615 (RQP18_06580) argH 1324750..1326129 (+) 1380 WP_342386961.1 argininosuccinate lyase -
  RQP18_RS06620 (RQP18_06585) - 1326180..1326419 (-) 240 WP_031545006.1 DUF2759 domain-containing protein -
  RQP18_RS06625 (RQP18_06590) - 1326510..1327133 (+) 624 WP_342386962.1 MBL fold metallo-hydrolase -
  RQP18_RS06630 (RQP18_06595) - 1327188..1327436 (-) 249 WP_031545000.1 DUF2626 family protein -
  RQP18_RS06635 (RQP18_06600) - 1327649..1328644 (+) 996 WP_373445986.1 ATPase, T2SS/T4P/T4SS family -
  RQP18_RS06640 (RQP18_06605) comGB 1328610..1329662 (+) 1053 WP_342386964.1 competence type IV pilus assembly protein ComGB -
  RQP18_RS06645 (RQP18_06610) comGC 1329673..1330002 (+) 330 WP_342386965.1 competence type IV pilus major pilin ComGC Machinery gene
  RQP18_RS06650 (RQP18_06615) - 1329977..1330411 (+) 435 WP_342386966.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RQP18_RS06655 (RQP18_06620) - 1330401..1330670 (+) 270 WP_342386967.1 hypothetical protein -
  RQP18_RS06660 (RQP18_06625) - 1330654..1331073 (+) 420 WP_342386968.1 ComGF family competence protein -
  RQP18_RS06665 (RQP18_06630) - 1331232..1331717 (+) 486 WP_342386969.1 shikimate kinase -
  RQP18_RS06670 (RQP18_06635) gcvT 1331958..1333043 (+) 1086 WP_342389381.1 glycine cleavage system aminomethyltransferase GcvT -
  RQP18_RS06675 (RQP18_06640) gcvPA 1333065..1334408 (+) 1344 WP_342386970.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11728.57 Da        Isoelectric Point: 4.1435

>NTDB_id=901834 RQP18_RS06645 WP_342386965.1 1329673..1330002(+) (comGC) [Salinicoccus sp. Bachu38]
MRNLIAKKFQKNNDAGFTLIEMLLVLLVISVLIILIIPNIAAQSANVQDTGCEAQVRMVQSQVEAYTLNEGGPPAAIDSL
VPEYLTSEQITCANGDAIVLTNGQAIRTE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=901834 RQP18_RS06645 WP_342386965.1 1329673..1330002(+) (comGC) [Salinicoccus sp. Bachu38]
ATGAGAAATCTAATTGCAAAAAAGTTTCAGAAGAACAATGACGCTGGCTTTACACTGATAGAAATGCTGCTTGTCCTGCT
CGTCATATCGGTGCTGATCATCCTGATCATACCGAACATAGCGGCGCAGAGCGCCAATGTACAGGACACCGGCTGCGAGG
CACAGGTGCGCATGGTGCAGAGCCAGGTTGAAGCGTATACGCTGAATGAGGGAGGACCTCCGGCAGCCATAGACAGCCTT
GTTCCCGAATATTTGACGTCGGAACAGATCACATGTGCAAATGGGGATGCGATCGTCTTGACCAATGGGCAGGCGATACG
CACTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

54

91.743

0.495
  comGC Staphylococcus aureus N315

54

91.743

0.495