Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   TthTMY_RS11625 Genome accession   NZ_AP025158
Coordinates   2145266..2147299 (+) Length   677 a.a.
NCBI ID   WP_096411361.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140266..2152299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS11590 (TthTMY_23000) - 2140924..2141388 (+) 465 WP_096411354.1 hypothetical protein -
  TthTMY_RS11595 (TthTMY_23010) pfkA 2141365..2142333 (-) 969 WP_096411355.1 6-phosphofructokinase -
  TthTMY_RS11600 (TthTMY_23020) rsmI 2142330..2143124 (-) 795 WP_096411356.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TthTMY_RS11605 (TthTMY_23030) - 2143126..2143620 (-) 495 WP_096411357.1 hypothetical protein -
  TthTMY_RS11610 (TthTMY_23040) - 2143784..2144311 (-) 528 WP_096411358.1 inorganic diphosphatase -
  TthTMY_RS11615 (TthTMY_23050) - 2144344..2144988 (+) 645 WP_096411359.1 YcxB family protein -
  TthTMY_RS11620 comEA 2144961..2145269 (+) 309 WP_172844695.1 ComEA family DNA-binding protein Machinery gene
  TthTMY_RS11625 (TthTMY_23070) comA/comEC 2145266..2147299 (+) 2034 WP_096411361.1 ComEC/Rec2 family competence protein Machinery gene
  TthTMY_RS11630 (TthTMY_23080) - 2147287..2148096 (-) 810 WP_096411362.1 ParB/RepB/Spo0J family partition protein -
  TthTMY_RS11635 (TthTMY_23090) soj 2148080..2148829 (-) 750 WP_096411363.1 chromosome-partitioning ATPase Soj -
  TthTMY_RS11640 (TthTMY_23100) rsmG 2148823..2149572 (-) 750 WP_096411364.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71925.15 Da        Isoelectric Point: 10.3957

>NTDB_id=90180 TthTMY_RS11625 WP_096411361.1 2145266..2147299(+) (comA/comEC) [Thermus thermophilus strain TMY]
MRPSWTWGVGLGAGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHHPPLPDGRYRLRGRIVPPQGRANPGGFDQRAWLLSRGAKGVFRAESAEPLGPLPDWREGFRERLGAGLGLEA
REVVEGLVLGDKGGLEAAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGLQLSYLAVLGLALVLPALRLPTGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALLAPLVEPLARGLLLLAVLAAQGPLLRWGEIAPP
GFALYYLGLLPLLFALHRRLPWRRALLLATLPALASLLAARPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRVEKGEAV
VRALRALGVEALELLVATHPDADHYGGLLRVVEEVPVGLALLAPGFPEDHPLAEALRARDVPVVRAGAGTRLKVGRGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREAEARLPVGEVEALKVSHHGSQSGTSEALLERTRPRVALIGVGPN
PFGHPHPEVLERLKRHGVEVRRTDRDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=90180 TthTMY_RS11625 WP_096411361.1 2145266..2147299(+) (comA/comEC) [Thermus thermophilus strain TMY]
ATGAGGCCCTCTTGGACCTGGGGGGTAGGGCTTGGGGCGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCCTGGGC
CTTCCTCGGCCTTGGCCTCCTTCCCTTTCTCCGCCTTCCCTTCGCCCTGGGCTTTGGCCTCGTCTTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACGCGGGCGGAG
GGCCACCTCCTTTGGGTGAGCCACCACCCCCCTTTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGTCCCGCCCCA
AGGCCGGGCCAACCCCGGGGGATTTGACCAACGGGCCTGGCTCCTGAGCCGGGGGGCCAAGGGGGTTTTCCGGGCCGAAA
GCGCCGAACCCTTAGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGAGCGCCTAGGGGCGGGCCTGGGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCCTAGAGGCGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTTTCCGGCCTACATGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGACTCTACCCCTTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTGTCCCTCCTCGGCCTCTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTGCGCCCCGAGGCCCTCCTCGGCCTCGGGCTCCAACTTTCCTACCTGGCGGTCCTGGGCC
TGGCCCTGGTCCTGCCCGCCCTGAGGCTTCCCACGGGCCCCAGGGGCTACCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCCCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTGCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCTCGCCCCCCTGGTGGAGC
CCCTCGCCCGGGGACTCCTCCTCCTGGCGGTACTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCCCA
GGATTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCACGCTTCCCGCCCTGGCGAGCCTCCTCGCCGCCCGGCCCAAGCCCCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGTGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTCCTCCGGGTGGTGGAGGAGGTCCCCGTGGGCCTCGCCCTCCTCGCCCCCGGCTTCCCCGAGGACCACCCCCTGGCCG
AGGCCCTAAGGGCGCGGGACGTTCCCGTCGTCCGGGCCGGGGCGGGGACCCGCCTTAAGGTGGGCCGGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGCGGAGGCCAGGCTTCCCGTGGGGGAGGTGGAGGCGCTCAAGGTGAGCCACC
ACGGCTCCCAAAGCGGCACCTCCGAAGCCCTCCTGGAAAGGACGAGGCCCCGGGTGGCCCTCATCGGGGTGGGGCCCAAC
CCCTTCGGCCACCCCCACCCCGAGGTCCTGGAGCGCCTTAAGCGCCACGGCGTGGAGGTGCGCCGCACCGACCGGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(167-418)

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

96.16

100

0.962
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.131

90.547

0.363

Multiple sequence alignment