Detailed information NTG0901773

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SD207_RS15760
• Genome accession: NZ_CP138324
• Coordinates: 3347099..3347959 (+)
• Length: 286 a.a.
• NCBI ID: WP_002047652.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain JBAB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3342099..3352959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD207_RS15740 (SD207_15740)	secG	3342704..3343033 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
SD207_RS15745 (SD207_15745)	tpiA	3343046..3343840 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
SD207_RS15750 (SD207_15750)	pilB	3344131..3345843 (+)	1713	WP_002047650.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SD207_RS15755 (SD207_15755)	pilC	3345873..3347099 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
SD207_RS15760 (SD207_15760)	pilD	3347099..3347959 (+)	861	WP_002047652.1	A24 family peptidase	Machinery gene
SD207_RS15765 (SD207_15765)	coaE	3347961..3348557 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
SD207_RS15770 (SD207_15770)	-	3348554..3349468 (-)	915	WP_000075011.1	DMT family transporter	-
SD207_RS15775 (SD207_15775)	rlmB	3349504..3350253 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SD207_RS15780 (SD207_15780)	-	3350355..3350681 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
SD207_RS15785 (SD207_15785)	-	3350758..3352068 (-)	1311	WP_002047661.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32143.56 Da
• Isoelectric Point: 7.1041

>NTDB_id=901773 SD207_RS15760 WP_002047652.1 3347099..3347959(+) (pilD) [Acinetobacter baumannii strain JBAB]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=901773 SD207_RS15760 WP_002047652.1 3347099..3347959(+) (pilD) [Acinetobacter baumannii strain JBAB]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAATTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441