Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SD207_RS09420 Genome accession   NZ_CP138324
Coordinates   2012141..2012521 (-) Length   126 a.a.
NCBI ID   WP_000836915.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007141..2017521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS09390 (SD207_09390) tadA 2007260..2007763 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  SD207_RS09395 (SD207_09395) - 2007770..2008894 (-) 1125 WP_100229083.1 enoyl-CoA hydratase/isomerase family protein -
  SD207_RS09400 (SD207_09400) ung 2008891..2009604 (-) 714 WP_279727491.1 uracil-DNA glycosylase -
  SD207_RS09405 (SD207_09405) - 2009655..2010251 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  SD207_RS09410 (SD207_09410) gspK 2010481..2011440 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  SD207_RS09415 (SD207_09415) xcpW 2011440..2012141 (-) 702 WP_000594584.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SD207_RS09420 (SD207_09420) xcpV 2012141..2012521 (-) 381 WP_000836915.1 type II secretion system minor pseudopilin GspI Machinery gene
  SD207_RS09425 (SD207_09425) - 2012511..2013065 (-) 555 WP_000841373.1 type II secretion system protein -
  SD207_RS09430 (SD207_09430) - 2013075..2013683 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  SD207_RS09435 (SD207_09435) - 2013721..2014494 (-) 774 WP_000497298.1 TatD family hydrolase -
  SD207_RS09440 (SD207_09440) - 2014512..2014853 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  SD207_RS09445 (SD207_09445) - 2014865..2015845 (-) 981 WP_025467814.1 DNA polymerase III subunit delta' -
  SD207_RS09450 (SD207_09450) kdsB 2015857..2016618 (-) 762 WP_002047364.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=901758 SD207_RS09420 WP_000836915.1 2012141..2012521(-) (xcpV) [Acinetobacter baumannii strain JBAB]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=901758 SD207_RS09420 WP_000836915.1 2012141..2012521(-) (xcpV) [Acinetobacter baumannii strain JBAB]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984