NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	SD207_RS09415	Genome accession	NZ_CP138324
Coordinates	2011440..2012141 (-)	Length	233 a.a.
NCBI ID	WP_000594584.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain JBAB
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2006440..2017141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD207_RS09385 (SD207_09385)	-	2006747..2007190 (-)	444	WP_001246675.1	SRPBCC family protein	-
SD207_RS09390 (SD207_09390)	tadA	2007260..2007763 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
SD207_RS09395 (SD207_09395)	-	2007770..2008894 (-)	1125	WP_100229083.1	enoyl-CoA hydratase/isomerase family protein	-
SD207_RS09400 (SD207_09400)	ung	2008891..2009604 (-)	714	WP_279727491.1	uracil-DNA glycosylase	-
SD207_RS09405 (SD207_09405)	-	2009655..2010251 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
SD207_RS09410 (SD207_09410)	gspK	2010481..2011440 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
SD207_RS09415 (SD207_09415)	xcpW	2011440..2012141 (-)	702	WP_000594584.1	type II secretion system minor pseudopilin GspJ	Machinery gene
SD207_RS09420 (SD207_09420)	xcpV	2012141..2012521 (-)	381	WP_000836915.1	type II secretion system minor pseudopilin GspI	Machinery gene
SD207_RS09425 (SD207_09425)	-	2012511..2013065 (-)	555	WP_000841373.1	type II secretion system protein	-
SD207_RS09430 (SD207_09430)	-	2013075..2013683 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
SD207_RS09435 (SD207_09435)	-	2013721..2014494 (-)	774	WP_000497298.1	TatD family hydrolase	-
SD207_RS09440 (SD207_09440)	-	2014512..2014853 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
SD207_RS09445 (SD207_09445)	-	2014865..2015845 (-)	981	WP_025467814.1	DNA polymerase III subunit delta'	-
SD207_RS09450 (SD207_09450)	kdsB	2015857..2016618 (-)	762	WP_002047364.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26622.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=901757 SD207_RS09415 WP_000594584.1 2011440..2012141(-) (xcpW) [Acinetobacter baumannii strain JBAB]

MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=901757 SD207_RS09415 WP_000594584.1 2011440..2012141(-) (xcpW) [Acinetobacter baumannii strain JBAB]

ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAGTTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0901757