Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SD207_RS01935 Genome accession   NZ_CP138324
Coordinates   408111..408746 (-) Length   211 a.a.
NCBI ID   WP_002044982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403111..413746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01900 (SD207_01900) mlaE 403447..404223 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SD207_RS01905 (SD207_01905) - 404223..404903 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SD207_RS01910 (SD207_01910) - 404930..405571 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  SD207_RS01915 (SD207_01915) - 405583..405870 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  SD207_RS01920 (SD207_01920) - 405940..406953 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  SD207_RS01925 (SD207_01925) - 407111..407692 (+) 582 WP_002045018.1 TIGR00730 family Rossman fold protein -
  SD207_RS01930 (SD207_01930) - 407707..408108 (+) 402 WP_002044984.1 NUDIX domain-containing protein -
  SD207_RS01935 (SD207_01935) comF 408111..408746 (-) 636 WP_002044982.1 ComF family protein Machinery gene
  SD207_RS01940 (SD207_01940) recG 408739..410784 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  SD207_RS01945 (SD207_01945) - 410805..411620 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  SD207_RS01950 (SD207_01950) adeT2 411700..412686 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24591.77 Da        Isoelectric Point: 9.7140

>NTDB_id=901749 SD207_RS01935 WP_002044982.1 408111..408746(-) (comF) [Acinetobacter baumannii strain JBAB]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTLY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=901749 SD207_RS01935 WP_002044982.1 408111..408746(-) (comF) [Acinetobacter baumannii strain JBAB]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCTTTATTACTCGCTAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATTATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986