Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | SC192_RS08455 | Genome accession | NZ_CP138205 |
| Coordinates | 1762253..1762633 (+) | Length | 126 a.a. |
| NCBI ID | WP_348897166.1 | Uniprot ID | A0AB39JV83 |
| Organism | Acinetobacter sp. 2019-01-05 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1757253..1767633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SC192_RS08425 (SC192_08435) | kdsB | 1758156..1758917 (+) | 762 | WP_348897171.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| SC192_RS08430 (SC192_08440) | - | 1758929..1759909 (+) | 981 | WP_348897170.1 | DNA polymerase III subunit delta' | - |
| SC192_RS08435 (SC192_08445) | - | 1759921..1760262 (+) | 342 | WP_348897169.1 | PilZ domain-containing protein | - |
| SC192_RS08440 (SC192_08450) | - | 1760280..1761053 (+) | 774 | WP_348897168.1 | TatD family hydrolase | - |
| SC192_RS08445 (SC192_08455) | - | 1761091..1761699 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| SC192_RS08450 (SC192_08460) | - | 1761709..1762263 (+) | 555 | WP_348897167.1 | type II secretion system protein | - |
| SC192_RS08455 (SC192_08465) | xcpV | 1762253..1762633 (+) | 381 | WP_348897166.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| SC192_RS08460 (SC192_08470) | xcpW | 1762633..1763448 (+) | 816 | WP_348897165.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| SC192_RS08465 (SC192_08475) | gspK | 1763448..1764407 (+) | 960 | WP_348897164.1 | type II secretion system minor pseudopilin GspK | - |
| SC192_RS08470 (SC192_08480) | - | 1764637..1765233 (+) | 597 | WP_348897163.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| SC192_RS08475 (SC192_08485) | ung | 1765284..1765997 (+) | 714 | WP_348897162.1 | uracil-DNA glycosylase | - |
| SC192_RS08480 (SC192_08490) | - | 1765994..1767118 (+) | 1125 | WP_348897161.1 | enoyl-CoA hydratase/isomerase family protein | - |
| SC192_RS08485 (SC192_08495) | tadA | 1767127..1767630 (+) | 504 | WP_348897160.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13980.18 Da Isoelectric Point: 9.4463
>NTDB_id=901399 SC192_RS08455 WP_348897166.1 1762253..1762633(+) (xcpV) [Acinetobacter sp. 2019-01-05]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTISPNVQKVDLQISLYDQDKGKVQSGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTISPNVQKVDLQISLYDQDKGKVQSGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=901399 SC192_RS08455 WP_348897166.1 1762253..1762633(+) (xcpV) [Acinetobacter sp. 2019-01-05]
ATGAAATCTAAAGGCTTTACCCTATTGGAGGTTATGGTCGCTCTAGCAATCTTTGCAGTAGCAGCTGTAGCCTTAACTAA
AGTGGCAATGCAATATACTCAATCTACTTCAAATGCGATTTTACGGACCAAAGCACAGTTTGTTGCTATGAATGAAGTCG
CTATGATGGAAATTAATCAAGAATGGTTACAAGGCACTCAAAGTAAACAGGTAACCTCTCAGGGGGAAACTTGGCAAATT
GATAAATCAGCTGAATCTACTATTAGTCCAAATGTTCAAAAAGTTGATTTGCAAATTAGTTTATATGATCAGGATAAGGG
AAAAGTACAAAGTGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCGAAATAA
ATGAAATCTAAAGGCTTTACCCTATTGGAGGTTATGGTCGCTCTAGCAATCTTTGCAGTAGCAGCTGTAGCCTTAACTAA
AGTGGCAATGCAATATACTCAATCTACTTCAAATGCGATTTTACGGACCAAAGCACAGTTTGTTGCTATGAATGAAGTCG
CTATGATGGAAATTAATCAAGAATGGTTACAAGGCACTCAAAGTAAACAGGTAACCTCTCAGGGGGAAACTTGGCAAATT
GATAAATCAGCTGAATCTACTATTAGTCCAAATGTTCAAAAAGTTGATTTGCAAATTAGTTTATATGATCAGGATAAGGG
AAAAGTACAAAGTGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |