Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SC192_RS02015 Genome accession   NZ_CP138205
Coordinates   424502..425137 (-) Length   211 a.a.
NCBI ID   WP_348895715.1    Uniprot ID   A0AB39JY63
Organism   Acinetobacter sp. 2019-01-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419502..430137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS01980 (SC192_01985) mlaE 419830..420606 (+) 777 WP_348895722.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SC192_RS01985 (SC192_01990) - 420606..421289 (+) 684 WP_348895721.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SC192_RS01990 (SC192_01995) - 421316..421957 (+) 642 WP_348895720.1 phospholipid-binding protein MlaC -
  SC192_RS01995 (SC192_02000) - 421969..422256 (+) 288 WP_196085716.1 lipid asymmetry maintenance protein MlaB -
  SC192_RS02000 (SC192_02005) - 422331..423344 (-) 1014 WP_348895719.1 magnesium and cobalt transport protein CorA -
  SC192_RS02005 (SC192_02010) - 423502..424083 (+) 582 WP_348895718.1 TIGR00730 family Rossman fold protein -
  SC192_RS02010 (SC192_02015) - 424098..424499 (+) 402 WP_348895717.1 NUDIX hydrolase -
  SC192_RS02015 (SC192_02020) comF 424502..425137 (-) 636 WP_348895715.1 ComF family protein Machinery gene
  SC192_RS02020 (SC192_02025) recG 425130..427175 (-) 2046 WP_348895714.1 ATP-dependent DNA helicase RecG -
  SC192_RS02025 (SC192_02030) - 427196..428011 (+) 816 WP_348895713.1 NAD-dependent epimerase/dehydratase family protein -
  SC192_RS02030 (SC192_02035) - 428091..429077 (+) 987 WP_348895712.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24599.84 Da        Isoelectric Point: 9.8973

>NTDB_id=901391 SC192_RS02015 WP_348895715.1 424502..425137(-) (comF) [Acinetobacter sp. 2019-01-05]
MFKLFSPQYLFQLLSPCLLCEIGTRDKYSLCKECWEQLPWLKQSIQRNHQSVLVACHYVYPLNQIIQQFKYEQKLHYQTL
LGEILQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAI
KQEKRRYRRVLIIDDVITTGSSIYALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=901391 SC192_RS02015 WP_348895715.1 424502..425137(-) (comF) [Acinetobacter sp. 2019-01-05]
ATGTTTAAGTTGTTCAGCCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGACAA
GTACTCGCTTTGCAAAGAATGTTGGGAACAACTACCGTGGCTTAAACAGTCTATCCAACGTAATCATCAATCTGTTCTGG
TGGCATGTCACTATGTATATCCACTTAACCAGATCATTCAGCAGTTTAAATATGAACAGAAATTACATTATCAAACCTTG
CTTGGCGAAATTTTACAGCAATTAAAATTTCCTAAAGTGCAAGCCATTGTACCTATGCCTATTTCTAAGCAACGTTTAAC
TGAACGTGGTTTCAATCAATCCTTACTACTCGCCAAACTTTTAAGTAAGCAACTAAAAATACCAGTTTGGCAACCTGTAC
AGCGCCTTAATGAACACTCTCAAAAAGGGTTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATC
AAGCAAGAAAAAAGACGTTACCGTCGTGTGCTTATTATTGATGATGTAATCACAACAGGAAGTTCAATTTACGCTTTGAG
TCAGGCCCTCAAACAGCTAGGATGCACATCTATTCATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCTTATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.891

100

0.929
  comF Acinetobacter baumannii D1279779

91.943

100

0.919