Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   SC192_RS01665 Genome accession   NZ_CP138205
Coordinates   354042..354518 (+) Length   158 a.a.
NCBI ID   WP_348895777.1    Uniprot ID   A0AB39K5N6
Organism   Acinetobacter sp. 2019-01-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349042..359518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS01655 (SC192_01655) - 349556..350338 (+) 783 WP_348895780.1 pilus assembly PilX N-terminal domain-containing protein -
  SC192_RS01660 (SC192_01660) - 350354..354028 (+) 3675 WP_348895779.1 PilC/PilY family type IV pilus protein -
  SC192_RS01665 (SC192_01665) comE 354042..354518 (+) 477 WP_348895777.1 type IV pilin protein Machinery gene
  SC192_RS01670 (SC192_01670) - 354512..354976 (+) 465 WP_348895776.1 type IV pilin protein -
  SC192_RS01675 (SC192_01675) rpsP 355124..355375 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SC192_RS01680 (SC192_01680) rimM 355395..355943 (+) 549 WP_348895775.1 ribosome maturation factor RimM -
  SC192_RS01685 (SC192_01685) trmD 355990..356745 (+) 756 WP_348895774.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SC192_RS01690 (SC192_01690) rplS 356965..357333 (+) 369 WP_348895773.1 50S ribosomal protein L19 -
  SC192_RS01695 (SC192_01695) - 357386..358327 (-) 942 WP_348895865.1 lipase family alpha/beta hydrolase -
  SC192_RS01700 (SC192_01700) - 358443..359477 (-) 1035 WP_348895772.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17226.75 Da        Isoelectric Point: 10.1270

>NTDB_id=901390 SC192_RS01665 WP_348895777.1 354042..354518(+) (comE) [Acinetobacter sp. 2019-01-05]
MKRKFTYSLGFTLIELMVVVAIVAIFAAVAIPSYQAYVLRADASRAQQQMQQIAVQLARQKSRNFNYKGFSTGSTAPVNL
PVGAPGSAIKYRITVRDGDDTTKPLTDPTVLGQNWVIRAEASDPNNFTYLLGSNGLRCKNKATSNVTYITCGTGAEPW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=901390 SC192_RS01665 WP_348895777.1 354042..354518(+) (comE) [Acinetobacter sp. 2019-01-05]
ATGAAACGTAAATTCACGTATTCTTTAGGCTTTACTCTTATTGAGCTAATGGTTGTGGTTGCGATTGTTGCTATTTTTGC
TGCAGTTGCAATCCCTTCATATCAGGCCTATGTTCTACGAGCTGATGCTTCACGTGCACAACAGCAAATGCAACAAATCG
CAGTGCAACTCGCACGTCAGAAATCTAGAAATTTTAATTACAAAGGTTTCTCTACCGGGTCTACAGCCCCAGTAAATTTG
CCTGTCGGAGCACCGGGTAGTGCTATTAAATACCGAATAACGGTACGGGATGGTGACGATACAACGAAACCCTTAACAGA
TCCTACAGTTTTAGGGCAAAACTGGGTTATCAGGGCAGAGGCTTCCGATCCTAATAATTTTACTTATTTGTTGGGTAGTA
ATGGATTACGTTGCAAGAATAAAGCCACTAGCAATGTTACTTATATCACTTGTGGCACTGGAGCTGAGCCTTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.061

100

0.481
  pilY2 Acinetobacter baumannii D1279779

43.75

100

0.443