Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RA179_RS19640 Genome accession   NZ_CP138201
Coordinates   3804268..3804387 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3799268..3809387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS19620 (RA179_19620) - 3800288..3800989 (+) 702 WP_151174591.1 bacteriocin biosynthesis protein AlbG -
  RA179_RS19625 (RA179_19625) - 3800996..3801352 (-) 357 Protein_3806 YncE family protein -
  RA179_RS19630 (RA179_19630) - 3801552..3802910 (-) 1359 WP_106019735.1 YncE family protein -
  RA179_RS19635 (RA179_19635) rapF 3803139..3804284 (+) 1146 WP_188323349.1 tetratricopeptide repeat protein Regulator
  RA179_RS19640 (RA179_19640) phrF 3804268..3804387 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RA179_RS19645 (RA179_19645) - 3804640..3805119 (+) 480 WP_061572213.1 hypothetical protein -
  RA179_RS19650 (RA179_19650) - 3805268..3806056 (+) 789 WP_188323350.1 hypothetical protein -
  RA179_RS19655 (RA179_19655) - 3806043..3806717 (+) 675 WP_188323351.1 hypothetical protein -
  RA179_RS19660 (RA179_19660) - 3806727..3807524 (+) 798 WP_223203941.1 hypothetical protein -
  RA179_RS19665 (RA179_19665) - 3807527..3808174 (+) 648 WP_188323353.1 ABC transporter ATP-binding protein -
  RA179_RS19670 (RA179_19670) - 3808167..3808727 (+) 561 WP_188323354.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=901380 RA179_RS19640 WP_010332289.1 3804268..3804387(+) (phrF) [Bacillus halotolerans strain DY299]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=901380 RA179_RS19640 WP_010332289.1 3804268..3804387(+) (phrF) [Bacillus halotolerans strain DY299]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACAAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462