Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LDO36_RS16270 Genome accession   NZ_AP025155
Coordinates   3605743..3606354 (+) Length   203 a.a.
NCBI ID   WP_101112463.1    Uniprot ID   A0AAV5NTG8
Organism   Vibrio penaeicida strain TUMSAT-OK2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3600743..3611354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO36_RS16250 - 3601187..3601900 (-) 714 WP_185829760.1 general secretion pathway protein GspB -
  LDO36_RS16255 - 3601964..3603571 (-) 1608 WP_126607214.1 ExeA family protein -
  LDO36_RS16260 - 3603656..3604867 (+) 1212 WP_126607215.1 multifunctional CCA addition/repair protein -
  LDO36_RS16265 hpt 3604955..3605488 (-) 534 WP_101112462.1 hypoxanthine phosphoribosyltransferase -
  LDO36_RS16270 opaR 3605743..3606354 (+) 612 WP_101112463.1 TetR/AcrR family transcriptional regulator Regulator
  LDO36_RS16275 lpdA 3606509..3607939 (-) 1431 WP_101112464.1 dihydrolipoyl dehydrogenase -
  LDO36_RS16280 aceF 3608187..3609746 (-) 1560 WP_126606917.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23374.60 Da        Isoelectric Point: 5.0055

>NTDB_id=90130 LDO36_RS16270 WP_101112463.1 3605743..3606354(+) (opaR) [Vibrio penaeicida strain TUMSAT-OK2]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESILPEATAEENLTSLTKNIIKFALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRVEDMFLTAMQRGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVASFLGMLCIYKQD

Nucleotide


Download         Length: 612 bp        

>NTDB_id=90130 LDO36_RS16270 WP_101112463.1 3605743..3606354(+) (opaR) [Vibrio penaeicida strain TUMSAT-OK2]
ATGGATACTGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAGAAACGTAAAGAACAGCTGCATGATATTGCGATAGA
AGTATTCGCAAAACGCGGTATCGGTCGCGGTGGTCACGCTGATATTGCTGAGATCGCTCAGGTATCAGTTGCAACTGTTT
TCAACTACTTCCAGACCCGTGAAGATTTGGTTGATGAAGTACTGAGCCAAGTTGAGAAACAATACGCTCTTTTCATCAAT
GAAAGCATTCTTCCAGAAGCAACTGCCGAAGAAAACTTAACGAGCCTAACCAAGAACATCATTAAGTTTGCACTCGATGG
CACGCACTGGATGAAAGTTTGGTTCGAGTGGAGCACATCTACTCGTGAAGAAGTATGGCCTTTGTTCCTATCCAGTAACG
AAGAATCTCAGAAGCGTGTTGAAGACATGTTCCTGACCGCGATGCAACGTGGCGAAGTATGCGATGAGCACAAAGCAGAA
GACTTAGCTAAGCTATTACACGGCATTTGCTACTCTCTTTATGTTCAAGCTAACCGCAACCCAGATCCAGAGTACTTAGA
AGGGCTTGTAGCTAGCTTCCTGGGTATGCTTTGCATTTACAAGCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61.084

100

0.611
  hapR Vibrio cholerae C6706

59

98.522

0.581
  hapR Vibrio cholerae strain A1552

59

98.522

0.581

Multiple sequence alignment