Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HK937_RS07040 Genome accession   NZ_CP137883
Coordinates   1369254..1370222 (+) Length   322 a.a.
NCBI ID   WP_002869322.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364254..1375222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS07015 (HK937_0007015) cdsA 1365164..1365889 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  HK937_RS07020 (HK937_0007020) - 1365898..1366236 (-) 339 WP_002852397.1 hypothetical protein -
  HK937_RS07025 (HK937_0007025) - 1366238..1367545 (-) 1308 WP_002864240.1 NFACT RNA binding domain-containing protein -
  HK937_RS07030 (HK937_0007030) mobA 1367607..1368182 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  HK937_RS07035 (HK937_0007035) pldA 1368179..1369168 (+) 990 WP_224385826.1 phospholipase A -
  HK937_RS07040 (HK937_0007040) ceuB 1369254..1370222 (+) 969 WP_002869322.1 ABC transporter permease Machinery gene
  HK937_RS07045 (HK937_0007045) ceuC 1370215..1371153 (+) 939 WP_038816948.1 iron chelate uptake ABC transporter family permease subunit -
  HK937_RS07050 (HK937_0007050) ceuD 1371150..1371905 (+) 756 WP_070264902.1 ABC transporter ATP-binding protein -
  HK937_RS07055 (HK937_0007055) ceuB 1371918..1372910 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  HK937_RS07065 (HK937_0007065) - 1373136..1373690 (-) 555 WP_224385825.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35397.29 Da        Isoelectric Point: 9.6678

>NTDB_id=900964 HK937_RS07040 WP_002869322.1 1369254..1370222(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain P4549]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=900964 HK937_RS07040 WP_002869322.1 1369254..1370222(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain P4549]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATTCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

100

100

1